![]() ![]() ![]() Velvet: algorithms for de novo short read assembly using de Bruijn graphs. ABySS: A parallel assembler for short read sequence data. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I.An Eulerian path approach to DNA fragment assembly. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes. ![]() Kurtz S, Narechania A, Stein J, Ware D.De novo assembly of human genomes with massively parallel short read sequencing. Li H, Handsaker B, Wysoker A, Fennel T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, the 1000 Genome Project Data Processing Subgroup The Sequence Alignment/Map format and SAMtools.De novo fragment assembly with short mate-paired reads: Does the read length matter? Genome Research. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM.ALLPATHS: De novo assembly of whole-genome shotgun microreads. Butler J, MacCallum I, Kleber M, Shlyakhter IA, Belmonte MK, Lander ES, Nusbaum C, Jaffe DB.Velvetg directory (…) -amos_file yes Literature ![]()
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